Publications

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

C. Keith Cassidy, Benjamin Himes, Frances J. Alvarez, Jun Ma, Gongpu Zhao, Juan R. Perilla, Klaus Schulten, Peijun Zhang

eLife , 2015 , Pages: 10.7554/eLife.08419
Atomic modeling of an immature retroviral lattice using molecular dynamics and mutagenesis

Boon Chong Goh*, Juan R. Perilla*, Matthew R. England, Katrina J. Heyrana, Rebecca C. Craven, Klaus Schulten

Structure , 2015 , 23 , Pages: 1414-1425
Molecular dynamics simulations of large macromolecular complexes

Juan R. Perilla, Boon Chong Goh, C. Keith Cassidy, Bo Liu, Rafael Bernardi, Till Rudack, Hang Yu, Zhe Wu, Klaus Schulten

Current Opinion in Structural Biology , 2015 , 31 , Pages: 64-74
Molecular dynamics simulations of transitions for ECD Epidermal Growth Factor Receptors show key differences between human and drosophila forms of the receptors

Juan R. Perilla , Daniel Leahy , Thomas B. Woolf

Proteins: Structure, Function, and Bioinformatics , 2013 , 81 , Pages: 1113-1126
Computing ensembles of transitions with molecular dynamics simulations.

Juan R. Perilla , Thomas B. Woolf

In Molecular Modeling of Proteins - Methods in Molecular Biology, Springer; ISBN: 978-1-4939-1464-7 , 2015
Ictal propagation of high frequency activity is recapitulated in interictal recordings: effective connectivity of epileptogenic networks recorded with intracranial EEG

Anna Korzeniewska, Mackenzie Cervenka, Christopher Jouny, Juan R. Perilla, Jaroslaw Harezlak, Gregory Bergey, Piotr J. Franaszczuk, Nathan Crone

Neuroimage , 2014 , 101 , Pages: 96-113
Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open <-> Closed Transitions

Oliver Beckstein, Elizabeth Denning, Juan R. Perilla, Thomas Woolf

Journal of Molecular Biology , 2009 , 394 , Pages: 160-176
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

Gongpu Zhao*, Juan R. Perilla*, Ernest Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M. Gronenborn, Klaus Schulten, Christopher Aiken, Peijun Zhang

Nature , 2013 , 497 , Pages: 643-646
Computing ensembles of transitions from stable states: Dynamic importance sampling

Juan R. Perilla, Oliver Beckstein, Elizabeth Denning, Thomas B. Woolf

Journal of Computational Chemistry , 2011 , 32 , Pages: 196-209
Towards the prediction of order parameters from molecular dynamics simulations in proteins

Juan R. Perilla, Thomas B. Woolf

Journal of Chemical Physics , 2012 , 136 , Pages: 164101

Perilla Laboratory
Department of Chemistry & Biochemistry
University of Delaware
177 Brown Laboratory
Newark, DE 19716

HIGHLIGHTS

UPCOMING EVENTS

GALLERY

Copyright 2017 – Perilla Lab – Department of Chemistry and Biochemistry, University of Delaware

Perilla Laboratory Department of Chemistry & Biochemistry University of Delaware 177 Brown Laboratory Newark, DE 19716

HIGHLIGHTS

UPCOMING EVENTS

GALLERY

Copyright 2017 – Perilla Lab – Department of Chemistry and Biochemistry, University of Delaware

Perilla Laboratory
Department of Chemistry & Biochemistry
University of Delaware
177 Brown Laboratory
Newark, DE 19716