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Publications

  • CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations
    Juan R. Perilla, Gongpu Zhao, Manman Lu, Jiying Ning, Guangjin Hou, In-Ja L. Byeon, Angela M. Gronenborn, Tatyana Polenova, Peijun Zhang
    Journal of Physical Chemistry B , 2017 , Pages: 10.1021/acs.jpcb.6b13105
  • Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations
    Juan R. Perilla, Klaus Schulten
    Nature Communications , 2017 , 8 , Pages: 15959
  • Length of encapsidated cargo impacts stability and structure of in vitro assembled Alphavirus core-like particles.
    Vamseedhar Rayaprolu, Alan Moore, Joseph Wang, Boon Chong Goh, Juan R. Perilla, Adam Zlotnick, Suchetana Mukhopadhyay
    Journal of Physics: Condensed Matter , 2017
  • GPU-accelerated molecular dynamics clustering analysis with openACC.
    John E. Stone, Juan R. Perilla, C. Keith Cassidy, Klaus Schulten
    In Parallel Programming with openACC, Elsevier, 2016; ISBN: 9780124103979 , 2016
  • HIV-1 Capsid Function is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD
    Huilan Zhang, Guangjin Hou, Manman Lu, Jinwoo Ahn, In-Ja L. Byeon, Christopher J. Langmead, Juan R. Perilla, Ivan Hung Peter, L. Gor’kov Zhehong, Gan William, W. Brey, David A. Case, Klaus Schulten, Angela M. Gronenborn, Tatyana Polenova
    Journal of the American Chemical Society , 2016 , 138 , Pages: 14066–14075
  • Contributions of charged residues in structurally dynamic capsid surface loops to Rous sarcoma virus assembly
    Katrina Heyrana, Boon Chong Goh, Juan R. Perilla, Tam-Linh Nguyen, Mathew England, Maria Bewley, Klaus Schulten, Rebecca Craven
    Journal of Virology , 2016 , Pages: 10.1128/JVI.00378-16
  • All-Atom Molecular Dynamics of Virus Capsids as Drug Targets
    Juan R. Perilla, Jodi A. Hadden, Boon Chong Goh, Christopher Mayne, Klaus Schulten
    Journal of Physical Chemistry Letters , 2016 , 7 , Pages: 1836–1844
  • Molecular Architecture of the Retroviral Capsid
    Juan R. Perilla, Angela M. Gronenborn
    Trends in Biochemical Sciences , 2016 , 5 , Pages: 410-420
  • Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site
    Chuang Liu*, Juan R. Perilla*, Jiying Ning, Manman Lu, Guangjin Hou, Ruben Ramalho, Benjamin A. Himes, Gongpu Zhao, Gregory J. Bedwell, In-Ja Byeon, Jinwoo Ahn, Angela M. Gronenborn, Peter E. Prevelige, Itay Rousso, Christopher Aiken, Tatyana Polenova, Klaus Schulten, Peijun Zhang
    Nature Communications , 2016 , 7 , Pages: 10714
  • Dynamic allostery governs cyclophilin A-HIV capsid interplay.
    Manman Lu, Guangjin Hou, Huilan Zhang, Christopher L. Suiter, Jinwoo Ahn, In-Ja Byeon, Juan R. Perilla, Christopher J. Langmead, Ivan Hung, Peter L. Gor'kov, Zhehong Gan, William Brey, Christopher Aiken, Peijun Zhang, Klaus Schulten, Angela M. Gronenborn, Tatyana Polenova
    Proceedings of the National Academy of Sciences USA , 2015 , 112 , Pages: 14617-14622
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Perilla Laboratory
Department of Chemistry & Biochemistry
University of Delaware
177 Brown Laboratory
Newark, DE 19716

HIGHLIGHTS

  • Our group reveals details of how HIV-1 becomes infectious.
  • Our group is awarded the best HPC collaboration at SuperComputing 18
  • Our work is nominated to the HPC Wire reader's award
  • Supercomputer Simulations show new target in HIV-1 replication
  • Postdoctoral researcher position

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Copyright 2017 – Perilla Lab – Department of Chemistry and Biochemistry, University of Delaware